Features Solution Center
Dive into the power of our software’s capabilities! Unleash a world of efficiency and innovation with our feature-rich solutions. From intuitive user interfaces to seamless integration, our software is designed to elevate your digital experience. Explore advanced functionalities such as [specific features], ensuring you have the tools you need to thrive in a dynamic digital landscape. With a focus on performance, security, and user satisfaction, our software features are tailored to meet your diverse needs. Elevate your workflow and unlock new possibilities with our cutting-edge technology.
List of features in Cytomine software
Upload
Upload high-dimensional images in various formats. Cytomine natively supports various digital pathology and microscopy formats (TIFF, Generic tiled TIFF, Aperio SVS, Hamamatsu VMS and NDPI, 3DHistech MRXS, Leica SCN, Philips TIFF, OME-TIFF, …) or converts them into fast pyramidal image formats.
Category: Image management
Availability: Out of the box
Licence: Apache 2.0
Organize
Organize your images into projects (or “picture folders”) where each project corresponds to a specific study or experiment. Easily manage authenticated users with permission rights, define ontologies (with user-defined domain-specific terms), and associate meta-data.
Category: Project management
Licence: Apache 2.0
Explore
Explore your high-resolution (multi-gigapixel) image from anywhere in the world at multiple resolutions using modern navigation interfaces. Through distributed image tiling, image sizes are not limited to your computer memory.
Category: Image visualisation
Licence: Apache 2.0
Annotate
Annotate your images semantically by drawing multiple regions of interest (ellipses, rectangles, polygons, freehand drawings) and describe them through user-defined terms from structured vocabularies (ontologies), key-value properties, or metadata. Take advantage of our content-based image retrieval algorithms to speed up annotation.
Category: Image analysis; Semantic information
Licence: Apache 2.0
Consolidate
Consolidate image atlases (ground truths) and share them or use them as input for machine learning algorithms.
Licence: Apache 2.0
Share and review
Share and Review images and their semantic annotations with your collaborators worldwide using simple URLs. Our e-mailing and communication mechanisms allow you to discuss cases with your colleagues and follow other user’s observation paths in real-time via the Internet, thereby facilitating second opinion requests and improving interobserver agreement and reproducibility.
Category: Image management
Licence: Apache 2.0
Analyse
Analyze your sets of images with our generic, tree-based, machine learning algorithms implemented on modern, multi-core architectures and computing clusters. Algorithms for the recognition of tissue substructures, cell types, and landmarks can be trained by experts to speed-up and refine the detection and quantification of the most relevant biological “objects” in your images. Proofreading web user interfaces allow you to correct algorithms and derive relevant final quantification results.
Category: Image analysis
Availability: Out of the box
Licence: Apache 2.0
Extend
Extend the software with your own algorithms, plug-ins, web applications. Interoperate from your third-party software communicating through our RESTful standardized programming interfaces (Java and Python clients are already available, other languages can be easily plugged in). Cytomine is open-source hence fully extensible.
Licence: Apache 2.0
LTI
The Learning Tools Interoperability protocol synchronises users and their activities between the Cytomine software and Learning Management Systems such as Moodle, Claroline Connect, Open Edx or BlackBoard.
Category: User management
Availability: On demand
Licence: Cytomine.com
Shibboleth
The Shibboleth module allows Cytomine to use a shibboleth or SAML entity provider to built a Single Sign On.
Category: User management
Licence: Cytomine.com
LDAP
The LDAP module allows Cytomine to automate the user creation by importing them from the LDAP server of your institution.
Category: User management
Licence: Cytomine.com
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